diff --git a/.changeset/shy-melons-jog.md b/.changeset/shy-melons-jog.md
new file mode 100644
index 0000000000..a3c1c472a3
--- /dev/null
+++ b/.changeset/shy-melons-jog.md
@@ -0,0 +1,5 @@
+---
+"@medusajs/utils": patch
+---
+
+chore(): Generate migrations with correct mikro orm import path
diff --git a/packages/core/utils/src/migrations/index.ts b/packages/core/utils/src/migrations/index.ts
index 99db453168..d0376dfa6d 100644
--- a/packages/core/utils/src/migrations/index.ts
+++ b/packages/core/utils/src/migrations/index.ts
@@ -14,6 +14,22 @@ import { dirname, join } from "path"
 import { readDir } from "../common"
 import { CustomDBMigrator } from "../dal/mikro-orm/custom-db-migrator"
 
+// Define the replacement mappings
+const replacements = [
+  // MikroORM imports - replace mikro-orm/{subpath} with @medusajs/framework/mikro-orm/{subpath}
+  {
+    pattern: /from\s+['"]@?mikro-orm\/([^'"]+)['"]/g,
+    // eslint-disable-next-line quotes
+    replacement: 'from "@medusajs/framework/mikro-orm/$1"',
+  },
+  // PG imports - replace pg with @medusajs/framework/pg
+  {
+    pattern: /from\s+['"]pg['"]/g,
+    // eslint-disable-next-line quotes
+    replacement: 'from "@medusajs/framework/pg"',
+  },
+]
+
 /**
  * Events emitted by the migrations class
  */
@@ -70,7 +86,33 @@ export class Migrations extends EventEmitter<MigrationsEvents> {
     try {
       await this.migrateSnapshotFile(migrator["snapshotPath"])
       await this.ensureSnapshot(migrator["snapshotPath"])
-      return await migrator.createMigration()
+      const migrationResult = await migrator.createMigration()
+      const code = migrationResult.code
+      if (code) {
+        let modifiedContent = code
+        let wasModified = false
+
+        replacements.forEach(({ pattern, replacement }) => {
+          const newContent = modifiedContent.replace(pattern, replacement)
+          if (newContent !== modifiedContent) {
+            wasModified = true
+            modifiedContent = newContent
+          }
+        })
+
+        if (wasModified) {
+          await writeFile(
+            join(
+              connection.config.getDriver().config.get("migrations").path ?? "",
+              migrationResult.fileName
+            ),
+            modifiedContent,
+            "utf-8"
+          )
+        }
+        migrationResult.code = modifiedContent
+      }
+      return migrationResult
     } finally {
       await connection.close(true)
     }
diff --git a/packages/core/utils/src/modules-sdk/migration-scripts/migration-generate.ts b/packages/core/utils/src/modules-sdk/migration-scripts/migration-generate.ts
index 0f85397be7..4e5b6954eb 100644
--- a/packages/core/utils/src/modules-sdk/migration-scripts/migration-generate.ts
+++ b/packages/core/utils/src/modules-sdk/migration-scripts/migration-generate.ts
@@ -26,13 +26,12 @@ export function buildGenerateMigrationScript({
    * @param logger
    * @param moduleDeclaration
    */
-  return async function ({
-    options,
-    logger,
-  }: Pick<
-    LoaderOptions<ModulesSdkTypes.ModuleServiceInitializeOptions>,
-    "options" | "logger"
-  > = {}) {
+  return async function (
+    { options, logger } = {} as Pick<
+      LoaderOptions<ModulesSdkTypes.ModuleServiceInitializeOptions>,
+      "options" | "logger"
+    >
+  ) {
     logger ??= console as unknown as Logger
 
     logger.info(new Array(TERMINAL_SIZE).join("-"))