diff --git a/packages/core/modules-sdk/src/remote-query/__fixtures__/parse-filters.ts b/packages/core/modules-sdk/src/remote-query/__fixtures__/parse-filters.ts
index fdda72f545..857b0bbd37 100644
--- a/packages/core/modules-sdk/src/remote-query/__fixtures__/parse-filters.ts
+++ b/packages/core/modules-sdk/src/remote-query/__fixtures__/parse-filters.ts
@@ -2,6 +2,27 @@ import { defineJoinerConfig } from "@medusajs/utils"
 import { MedusaModule } from "../../medusa-module"
 import { ModuleJoinerConfig } from "@medusajs/types"
 
+const customModuleJoinerConfig = defineJoinerConfig("custom_user", {
+  schema: `
+    type CustomProduct {
+      id: ID
+      title: String
+      product: Product
+    }
+    
+    type Product {
+      id: ID
+      title: String
+    }
+  `,
+  alias: [
+    {
+      name: ["custom_products", "custom_product"],
+      entity: "CustomProduct",
+    },
+  ],
+})
+
 const productJoinerConfig = defineJoinerConfig("product", {
   schema: `
     type Product {
@@ -154,6 +175,7 @@ const linkProductVariantPriceSet = {
 
 MedusaModule.setJoinerConfig("product", productJoinerConfig)
 MedusaModule.setJoinerConfig("pricing", pricingJoinerConfig)
+MedusaModule.setJoinerConfig("customProduct", customModuleJoinerConfig)
 MedusaModule.setJoinerConfig(
   "link-product-variant-price-set",
   linkProductVariantPriceSet
diff --git a/packages/core/modules-sdk/src/remote-query/__tests__/parse-filters.spec.ts b/packages/core/modules-sdk/src/remote-query/__tests__/parse-filters.spec.ts
index ee5df36d11..a2e9df7a0d 100644
--- a/packages/core/modules-sdk/src/remote-query/__tests__/parse-filters.spec.ts
+++ b/packages/core/modules-sdk/src/remote-query/__tests__/parse-filters.spec.ts
@@ -11,6 +11,44 @@ const entitiesMap = getEntitiesMap(
 
 describe("parse-filters", () => {
   describe("Without operator map usage", () => {
+    it(`should parse filter for a single level module with ambiguous entity`, () => {
+      const filters = {
+        id: "string",
+        product: {
+          title: "test",
+        },
+      }
+
+      const remoteQueryObject = {
+        custom_product: {
+          fields: ["id", "product.*"],
+        },
+      }
+
+      parseAndAssignFilters(
+        {
+          remoteQueryObject,
+          entryPoint: "custom_product",
+          filters,
+        },
+        entitiesMap
+      )
+
+      expect(remoteQueryObject).toEqual({
+        custom_product: {
+          fields: ["id", "product.*"],
+          __args: {
+            filters: {
+              id: "string",
+              product: {
+                title: "test",
+              },
+            },
+          },
+        },
+      })
+    })
+
     it("should parse filter for a single level module", () => {
       const filters = {
         id: "string",
diff --git a/packages/core/modules-sdk/src/remote-query/parse-filters.ts b/packages/core/modules-sdk/src/remote-query/parse-filters.ts
index 74d047fc35..2c89f2ba05 100644
--- a/packages/core/modules-sdk/src/remote-query/parse-filters.ts
+++ b/packages/core/modules-sdk/src/remote-query/parse-filters.ts
@@ -1,8 +1,4 @@
-import {
-  JoinerServiceConfig,
-  JoinerServiceConfigAlias,
-  ModuleJoinerConfig,
-} from "@medusajs/types"
+import { JoinerServiceConfig, ModuleJoinerConfig } from "@medusajs/types"
 import { isObject, isString } from "@medusajs/utils"
 import { MedusaModule } from "../medusa-module"
 
@@ -33,23 +29,25 @@ export function parseAndAssignFilters(
   const joinerConfigs = MedusaModule.getAllJoinerConfigs()
 
   for (const [filterKey, filterValue] of Object.entries(filters)) {
-    let entryAlias!: JoinerServiceConfigAlias
+    /*let entryAlias!: JoinerServiceConfigAlias*/
     let entryJoinerConfig!: JoinerServiceConfig
 
-    const { joinerConfig, alias } = retrieveJoinerConfigFromPropertyName({
+    const { joinerConfig /*alias*/ } = retrieveJoinerConfigFromPropertyName({
       entryPoint: entryPoint,
       joinerConfigs,
     })
 
-    entryAlias = alias
+    /*JoinerServiceConfigentryAlias = alias!*/
     entryJoinerConfig = joinerConfig
 
-    const entryEntity = entitiesMap[entryAlias.entity!]
+    // TODO: This check is not used further than to validate the entity is part of the graphql schema
+    // This can't be used right now as we have not migrated the entire code base to DML from which the graphql schema is generated
+    /*const entryEntity = entitiesMap[entryAlias.entity!]
     if (!entryEntity) {
       throw new Error(
         `Entity ${entryAlias.entity} not found in the public schema of the joiner config from ${entryJoinerConfig.serviceName}`
       )
-    }
+    }*/
 
     if (isObject(filterValue)) {
       for (const [nestedFilterKey, nestedFilterValue] of Object.entries(
@@ -58,6 +56,7 @@ export function parseAndAssignFilters(
         const { joinerConfig: filterKeyJoinerConfig } =
           retrieveJoinerConfigFromPropertyName({
             entryPoint: nestedFilterKey,
+            parentJoinerConfig: joinerConfig,
             joinerConfigs,
           })
 
@@ -85,7 +84,7 @@ export function parseAndAssignFilters(
           parseAndAssignFilters(
             {
               entryPoint: nestedFilterKey,
-              filters: nestedFilterValue,
+              filters: nestedFilterValue as object,
               remoteQueryObject: remoteQueryObject[entryPoint][filterKey],
               isFieldAliasNestedRelation: isFieldAliasNestedRelation_,
             },
@@ -107,16 +106,38 @@ export function parseAndAssignFilters(
   }
 }
 
-function retrieveJoinerConfigFromPropertyName({ entryPoint, joinerConfigs }) {
+function retrieveJoinerConfigFromPropertyName({
+  entryPoint,
+  parentJoinerConfig,
+  joinerConfigs,
+}: {
+  entryPoint: string
+  parentJoinerConfig?: ModuleJoinerConfig
+  joinerConfigs: ModuleJoinerConfig[]
+}) {
+  if (parentJoinerConfig) {
+    const res = findAliasFromJoinerConfig({
+      joinerConfig: parentJoinerConfig,
+      entryPoint,
+    })
+    if (res) {
+      return res
+    }
+  }
+
   if (joinerConfigMapCache.has(entryPoint)) {
     return joinerConfigMapCache.get(entryPoint)!
   }
 
   for (const joinerConfig of joinerConfigs) {
-    const aliases = joinerConfig.alias
+    const joinerConfigAlias = joinerConfig.alias ?? []
+    const aliases = Array.isArray(joinerConfigAlias)
+      ? joinerConfigAlias
+      : [joinerConfigAlias]
+
     const entryPointAlias = aliases.find((alias) => {
       const aliasNames = Array.isArray(alias.name) ? alias.name : [alias.name]
-      return aliasNames.includes(entryPoint)
+      return aliasNames.some((alias) => alias === entryPoint)
     })
 
     if (entryPointAlias) {
@@ -132,6 +153,35 @@ function retrieveJoinerConfigFromPropertyName({ entryPoint, joinerConfigs }) {
   return {}
 }
 
+function findAliasFromJoinerConfig({
+  joinerConfig,
+  entryPoint,
+}: {
+  joinerConfig: ModuleJoinerConfig
+  entryPoint: string
+}) {
+  const joinerConfigAlias = joinerConfig.alias ?? []
+  const aliases = Array.isArray(joinerConfigAlias)
+    ? joinerConfigAlias
+    : [joinerConfigAlias]
+
+  const entryPointAlias = aliases.find((alias) => {
+    const aliasNames = Array.isArray(alias.name) ? alias.name : [alias.name]
+    return aliasNames.some((alias) => alias === entryPoint)
+  })
+
+  if (entryPointAlias) {
+    joinerConfigMapCache.set(entryPoint, {
+      joinerConfig,
+      alias: entryPointAlias,
+    })
+
+    return { joinerConfig, alias: entryPointAlias }
+  }
+
+  return
+}
+
 function assignRemoteQueryObject({
   entryPoint,
   filterKey,