feat(utils): define file config (#13283)

** What
 - Allow auto-loaded Medusa files to export a config object.
 - Currently supports isDisabled to control loading.
 - new instance `FeatureFlag` exported by `@medusajs/framework/utils`
 - `feature-flags` is now a supported folder for medusa projects, modules, providers and plugins. They will be loaded and added to `FeatureFlag`

** Why
 - Enables conditional loading of routes, migrations, jobs, subscribers, workflows, and other files based on feature flags.

```ts
// /src/feature-flags

import { FlagSettings } from "@medusajs/framework/feature-flags"

const CustomFeatureFlag: FlagSettings = {
  key: "custom_feature",
  default_val: false,
  env_key: "FF_MY_CUSTOM_FEATURE",
  description: "Enable xyz",
}

export default CustomFeatureFlag
```

```ts
// /src/modules/my-custom-module/migration/Migration20250822135845.ts

import { FeatureFlag } from "@medusajs/framework/utils"

export class Migration20250822135845 extends Migration {
  override async up(){ }
  override async down(){ }
}

defineFileConfig({
  isDisabled: () => !FeatureFlag.isFeatureEnabled("custom_feature")
})
```

packages/modules/link-modules/src/initialize/index.ts

@@ -32,7 +32,8 @@ export const initialize = async (
     | ExternalModuleDeclaration
     | InternalModuleDeclaration,
   pluginLinksDefinitions?: ModuleJoinerConfig[],
-  injectedDependencies?: InitializeModuleInjectableDependencies
+  injectedDependencies?: InitializeModuleInjectableDependencies,
+  cwd?: string
 ): Promise<{ [link: string]: ILinkModule }> => {
   const allLinks = {}
   const modulesLoadedKeys = MedusaModule.getLoadedModules().map(
@@ -167,6 +168,7 @@ export const initialize = async (
         declaration: options as InternalModuleDeclaration,
         moduleExports: moduleDefinition,
         injectedDependencies,
+        cwd,
       })
 
       allLinks[serviceKey as string] = Object.values(loaded)[0]